nnunet¶

Summary

Source: https://github.com/MIC-DKFZ/nnUNet

Path: /software/nnunet/<version>

Documentation: https://github.com/MIC-DKFZ/nnUNet

Citation: Isensee, F., Jaeger, P. F., Kohl, S. A., Petersen, J., & Maier-Hein, K. H. (2021). nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation. Nature methods, 18(2), 203-211.

nnU-Net is a semantic segmentation method that automatically adapts to a given dataset. It will analyze the provided training cases and automatically configure a matching U-Net-based segmentation pipeline. No expertise required on your end! You can simply train the models and use them for your application.

Using nnunet¶

module load maxwell nnunet