IceNine¶

Summary

Source: https://github.com/FrankieLi/IceNine

License:BSD like, see /opt/xray/IceNine

Path: /opt/xray/IceNine

Documentation: none

Citation: S. F. Li, and R. M. Suter, Adaptive reconstruction method for three-dimensional orientation imaging, Journal of Applied Crystallography, 2013.

IceNine is a forward model reconstruction code that implements an adaptive reconstruction method for three-dimensional orientation imaging.

Using IceNine¶

/opt/xray/IceNine/bin/IceNine 

# for mpi-parallel simulations it might be necessary to load the mpi environment:
module load mpi/mpich-x86_64

The multi-threaded parts of IceNine do not honor OMP_NUM_THREADS. The number of threads has to parsed ("G8") to the program.

Installation¶

see /opt/xray/IceNine/INSTALL