DIA-NN

Summary

Source: https://github.com/vdemichev/DiaNN

License: please consult /software/diann/1.9.1/LICENSE.txt

Path: /software/diann

Documentation: https://github.com/vdemichev/DiaNN

Citations: DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput Nature Methods, 2020

DIA-NN - a universal software suite for data-independent acquisition (DIA) proteomics data processing. Conceived at the University of Cambridge, UK, in the laboratory of Kathryn Lilley (Cambridge Centre for Proteomics), DIA-NN opened a new chapter in proteomics, introducing a number of algorithms which enabled reliable, robust and quantitatively accurate large-scale experiments using high-throughput methods (from the github page).

Using DIA-NN

There are two options, either to run as a container, or the local standalone installation. We recommend using the standalone installation.

Running DIA-NN as a singularity image

# Versions available: 1.8.1, 1.9.1, 1.9.2
singularity run docker://tollerort.desy.de/maxsoft/dia-nn:1.9.1 

Running standalone DIA-NN

module load maxwell diann
diann